In the last few years the gene expression microarray technology has become a central tool in the field of functional genomics in which the expression levels of thousands of genes in a biological sample are determined in a single experiment. Several clustering and biclustering methods have been introduced to analyze the gene expression data by identifying the similar patterns and grouping genes

Clusters of microcalcifications in mammograms are an important early sign of breast cancer in women. Comparing with microcalcifications, the breast background tissues have high local self-similarity, which is the basic property of fractal objects. A fast fractal modeling method of mammograms for detecting the presence of microcalcifications is proposed in this paper. The conventional fractal

We propose an Automatic Gene Ontology (AGO) software as a flexible, open-source Matlab software tool that allows the user to easily compare the results of the bicluster and cluster methods. This software provides several methods to differentiate and compare the results of candidate algorithms. The results reveal that bicluster/cluster algorithms could be considered as integrated modules to recover

The aim of our study was to investigate the ability of Strain-Encoded magnetic resonance imaging (MRI) to detect cardiac allograft vasculopathy (CAV) in heart transplantation (HTx)-recipients. In consecutive subjects (n = 69), who underwent cardiac catheterization, MRI was performed for quantification of myocardial strain and perfusion reserve. Based on angiographic findings subjects were

In this paper, we report our experience in working with Network Address Translators (NATs). Traditionally, there were only 4 types of NATs. For each type, the (im)possibility of traversal is well-known. Recently, the NAT community has provided a deeper dissection of NAT behaviors resulting into at least 27 types and documented the (im)possibility of traversal for some types. There are, however

Initial downlink synchronization for orthogonal frequency division multiple access ( OFDMA ) network access involves timing and frequency synchronization. The frequency offset is produced by oscillator drifts and time-varying Doppler shifts. In mobile WiMAX 802.16e carrier frequency offset (CFO) can be divided into: integral carrier frequency offset (ICFO) and fractional carrier frequency offset

Sensor Actor NETworks (SANET) represent a major component of ubiquitous service environments promising interesting solutions to a wide range of problems. Despite the obvious increase in the research activities proposing architectures and protocols for SANETs, we are still no where near the production of industrial-grade SANET software that can be relied upon for mission critical applications. The

With the widespread usage of the 802.11 protocol, it becomes important to study the protocol operation. In this paper we propose a formal model for the point coordination function (PCF) of the 802.11 MAC layer using systems of communicating machines. Our goal is to analyse the protocol for safety and liveness properties. These properties cannot be verified directly from the protocol description

Visualization of genome comparison data is valuable for identifying genomic structural variations and determining evolutionary events. Although there are many software tools with varying degrees of sophistication for displaying such comparisons, there is no tool for displaying dot plots of multiple genome comparisons. The dot plot mode of visualization is more appropriate and convenient than the

This paper studies interference channels with security constraints. The existence of an external eavesdropper in a two-user interference channel is assumed, where the network users would like to secure their messages from the external eavesdropper. The cooperative binning and channel prefixing scheme is proposed for this system model which allows users to cooperatively add randomness to the